PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0031s0167.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 292aa    MW: 32864.6 Da    PI: 7.5355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0031s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-1424105996
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           +++s+rl +p kf +++g    +++ + l  + g++W+v l   k  ++ ++ +GW +Fvk+  ++ gD++vF+++g+  f   v +
  Kaladp0031s0167.1.p  24 PNSSSDRLEIPHKFHQHIGVR--TNVWVLLSGRGGKVWRVGL--LKLHDTLIFNEGWAGFVKDSFVEIGDILVFEYSGDWLF--EVYI 105
                          5678899*******9766644..678999999**********..9*******************************997555..5555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2114111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2215111IPR015300DNA-binding pseudobarrel domain
CDDcd100179.81E-1616106No hitNo description
PROSITE profilePS5086312.8316109IPR003340B3 DNA binding domain
SMARTSM010191.3E-1018109IPR003340B3 DNA binding domain
PfamPF023625.1E-1223105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-5225277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.611226291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATGAPSALK SVGRKPHFIA TFVPNSSSDR LEIPHKFHQH IGVRTNVWVL LSGRGGKVWR  60
VGLLKLHDTL IFNEGWAGFV KDSFVEIGDI LVFEYSGDWL FEVYIFGENG CEKEVRDCLG  120
KLGPSLQKKR VRDGDTSSGR VVKKTGSDAC ISNVDCMNHE QEDFVATPCQ LGAPVTEPLA  180
LIIYREPWIE AEAQEIKYKQ TSQRLNSDPK WSKSSLYIFN HTLVLFITKM QKYNVDFRRV  240
LNIPMQFIRE NSLSYLTDEK MVLRTETGSS WSVNIVANTV DINYAEGGLL L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-16B3 family protein